Welcome to the DEBtox information site
Welcome to the DEBtox information page, the
site for people that want to make sense of ecotoxicity data.
This site contains information on mechanistic models for the
analysis of stressor effects on the life-history traits of
individual organisms (and from there to higher and lower
levels of biological organisation). Specifically, this site
is about models based on animal energy budgets (DEBtox and DEBkiss) and survival models
from the GUTS framework.
This website constitutes a node in the international DEBnet
network, together with the associated site of DEBtox Research.
The mission of DEBtox.info is to simplify biology to
get to the essence of what toxicants (and other stresses)
are actually doing to organisms. Simplification is necessary
if we need to gain understanding. Furthermore, we cannot
expect to test even a small fraction of all possible
(combinations of) toxicants, species and environmental
conditions. Once we get to the essence, it is possible to
make educated predictions of toxicant effects for untested
chemicals, untested species, and under untested conditions.
Here, you can find information, lists of relevant
publications, (links to) free e-books, and freely
downloadable Matlab packages to analyse your data. Use the
major categories on the top left of the screen to navigate
through this site; the corresponding sub-categories will
appear right next to it in the submenu.
BREAKING NEWS!
The free and open-source software
openGUTS is now available for download!
It is available as a standalone Windows executable
or as Matlab package. It supports the use of GUTS for regulatory
purposes, but will also prove useful for scientific
studies. The dedicated website http://openguts.info/
provides more information.
WARNING!
A calculation error was spotted in openGUTS,
which may affect IT calibrations/predictions
for specific types of exposure scenarios.
The Matlab version has been updated to v1.1
to repair this. For more information, see
the openGUTS
website.
WARNING! For
users of BYOM versions before v. 4.3, see the notes
and warnings on the BYOM page
(bottom of page). If
you are working with BYOM, and would like to be
notified immediately in case of errors, new
versions, etc., email me
and I will include you in a mailing list. I may also
use this mailing list for other important
developments such as new (versions) of the e-books,
and new papers. This saves you the hassle of
checking this website every week ;-).
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Upcoming courses and events
- Dedicated 2-day GUTS courses, geared towards
professionals in risk assessment of pesticides.
Wageningen, the Netherlands, dates to be announced. More information.
- In August 2021, we will again organise our
much-praised summer school "Dynamic modelling of toxic
effects" in Denmark. More information on the course page. Download 2020 flyer.
NOTE: due to the COVID-19
situation, the 2020 course was cancelled; we hope
things will be normalised by summer 2021.
- Roman Ashauer and myself gave an on-line short course
on openGUTS at the
2020 SETAC SciCon. This course is now available for
everyone via Leanpub: https://leanpub.com/c/openguts.
Although you don't get the interaction with the
instructors, this is still a nice way to educate
yourself in quarantine.
- In May 2021, there will be the next run of the DEB
school and the DEB symposium. This time, the venue is
Halifax, Canada. More
information. Note that part of the DEB school will
be in tele mode, and there probably will be some way to
join the symposium in virtual mode.
Job opportunities for modellers
- Nothing at the moment (that I know of).
Latest news
- 28 September 2020: spotted an error in the
no-shrinking equations that are used in the DEBkiss and
DEBtox2019 packages. This error could bias calibrations,
though the simulations were fine. These packages are
thus updated. This error does not affect the
DEBtox_classic package since there is no option to
prevent shrinking in that one. See
the BYOM page.
- 26-27 September 2020: update of the BYOM tox-related
packages. GUTS package: this update is especially a good
idea when using the ODE-solver versions in the
"experimental" folder. DEBtox2019 and DEBtox_classic
packages: more efficient/accurate ODE solving for
time-varying exposure. For all these packages: now
allowing double time points in the exposure definition
(as in openGUTS). See the BYOM page.
- 24 September 2020: update for BYOM to version 5.2.
Modified the parameter-space explorer to work reasonable
well for 6/7 free parameters (best left to experts).
Further modifications for time-varying exposure, now
allowing double time entries like in openGUTS and
efficiency improved for hard-pulsed exposure (these
changes also require updates for the packages that use
glo.break_time ... working on that!). See the BYOM page.
- 30 August 2020: update for BYOM to version 5.1.
Nothing spectacular, just fixed a few bugs and added a
few bells and whistles. See the
BYOM page.
- 2 June 2020: update for the BYOM package for classic
DEBtox and DEBkiss to match it to BYOM 5.0. See the BYOM page.
- 29 May 2020: update for BYOM to version 5.0. This is a
major update, with much new functionality (incl. the
parameter-space explorer from openGUTS). See the BYOM page. Also an update
of the GUTS and DEBtox2019 packages to make use of the
new functionality!
- 11 Dec. 2019: new paper presenting an updated
simplified DEB model for ecotoxicology (based on
DEBkiss, compound parameters). See https://doi.org/10.1016/j.ecolmodel.2019.108904.
Older news over here.
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